Classification Report Element

Based on the input taxonomy classification data the element generates a detailed report and saves it in a tab-delimited text format.

Element type: classification-report

Parameters

Parameter

Description

Defaultvalue

Parameter in Workflow File

Type

Output file

Specify the output text file name.

output-url

string

All taxa

By default, taxa with no sequences (reads or contigs) assigned are not included into the output. This option specifies to include all taxa.

This may be useful when an output from several samples is compared. Set "Sort by" to "Tax ID" in this case.

False

all-taxa

bool

Sort by

It is possible to sort rows in the output file in two ways:

by the number of reads, covered by the clade rooted at the taxon(i.e. "clade_num" for this taxID)
by taxIDs

The second option may be useful when an output from different samples is compared.

Tax ID

sort-by

string

Input/Output Ports

The element has 1 input port:

Name in GUI: Input taxonomy data

Name in Workflow File: in

Slots:

SlotInGUI	Slot in Workflow File	Type
Taxonomy classification data	tax-data	tax-classification

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Classification Report Element

Input/Output Ports