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Changes chromosome notation for each variant from the input, VCF or other variation files.

Element type: rename-chromosome-in-variation

Parameters

ParameterDescriptionDefault valueParameter in Workflow FileType
Replace prefixesInput the list of chromosome prefixes that you would like to replace. For example "NC_000". Separate different prefixes by semicolons.
prefixes-to-replace

string

Replace byInput the prefix that should be set instead, for example "chr".
prefix-replace-withstring

Input/Output Ports

The element has 1 input ports:

Name in GUI: Input file URL

Name in Workflow File: in-file

Slots:

Slot In GUISlot in Workflow FileType
Source URLurlstring


And 1 
output port:

Name in GUI: Output file URL

Name in Workflow File: out-file

Slots:

Slot In GUISlot in Workflow FileType
Produced URLurlstring
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