Page tree
Skip to end of metadata
Go to start of metadata

Extract the consensus sequence from the incoming multiple sequence alignment.

Element type: extract-msa-consensus-sequence

Parameters

ParameterDescriptionDefault valueParameter in Workflow FileType
AlgorithmThe algorithm of consensus extracting.
algorithmstring
ThresholdThe threshold of the algorithm.100thresholdnumeric
Keep gapsSet this parameter if the result consensus must keep the gaps.Truekeep-gapsboolean

Input/Output Ports

The element has 1 input port:

Name in GUI: in-msa

Name in Workflow File: in-msa

Slots:

Slot In GUISlot in Workflow FileType
MSAmsamsa

And 1 output port:

Name in GUI: out-sequence

Name in Workflow File: out-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequenceseq
  • No labels