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Extracts annotated regions from the input sequence.

Element type: extract-annotated-sequence

Parameters

ParameterDescriptionDefault valueParameter in Workflow FileType
TranslateTranslates the annotated regions if the corresponding annotation marks a protein subsequence.Falsetranslateboolean
ComplementComplements the annotated regions if the corresponding annotation is located on the complement strand.Falsecomplementboolean
Split joinedSplit joined annotations to single region annotations.Falsesplit-joined-annotationsboolean
Extend leftExtends the resulted regions to left.0extend-leftnumeric
Extend rightExtends the resulted regions to right.0extend-rightnumeric
Gap lengthInserts a gap of a specified length between the merged locations of the annotation.0merge-gap-lengthnumeric

Input/Output Ports

The element has 1 input port:

Name in GUI: Input sequence

Name in Workflow File: in-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence
Set of annotationsannotationsannotation-table

And 1 output port:

Name in GUI: Annotated regions

Name in Workflow File: out-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence
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