Align input sequences (e.g. Sanger reads) to the reference sequence.
Element type: align-to-reference
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Reference URL | A URL to the file with a reference sequence. | reference | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input sequence
Name in Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: Aligned data
Name in Workflow File: out
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | ann_table |
| MSA | msa | malignment |
| Sequence | sequence | sequence |