Page tree
Skip to end of metadata
Go to start of metadata

Builds a frequency matrix. Frequency matrices are used for probabilistic recognition of transcription factor binding sites.

Element type: fmatrix-build


ParameterDescriptionDefault valueParameter in Workflow FileType
Matrix typeDinucleic matrices are more detailed, while mononucleic one are more useful for small input data sets.Mononucleictype


Available values are:

  • true - for Dinucleic
  • false - for Mononucleic

Input/Output Ports

The element has 1 input port:

Name in GUI: Input alignment

Name in Workflow File: in-msa


Slot In GUISlot in Workflow FileType

And 1 output port:

Name in GUI: Frequency matrix

Name in Workflow File: out-fmatrix


Slot In GUISlot in Workflow FileType
Frequency matrixfmatrixfmatrix
  • No labels