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Extract the consensus sequence from the incoming assembly.

Element type: extract-consensus

Parameters

ParameterDescriptionDefault valueParameter in Workflow FileType
AlgorithmThe algorithm of consensus extracting.Defaultalgorithmstring
Keep gapsSet this parameter if the result consensus must keep the gaps.Truekeep-gapsboolean

Input/Output Ports

The element has 1 input port:

Name in GUI: in-assembly

Name in Workflow File: in-assembly

Slots:


Slot In GUI

Slot in Workflow File

Type

Assembly data

assembly

assembly

And 1 outut port:

Name in GUI: out-sequence

Name in Workflow File: out-sequence

Slots:


Slot In GUISlot in Workflow FileType
Sequencesequencestring
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