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Finds repeats in each supplied sequence, stores found regions as annotations.

Element type: repeats-search


ParameterDescriptionDefault valueParameter in Workflow FileType
Annotate as (required)Name of the result annotation to mark found repeats.repeat_unitresult-namestring
AlgorithmControl over variations of the algorithm.Autoalgorithm


Available values are:

  • 0 - algorithm choosed automaticly
  • 1 - for diagonal algorithm
  • 2 - for suffix index algorithm
Filter nestedFilters nested repeats.Truefilter-nestedboolean
IdentityRepeats identity in percent.100identitynumeric
InvertedSpecifies to search for inverted repeats.Falseinvertedboolean
Max distanceMaximum distance between the repeats.5000max-distancenumeric
Min distanceMinimum distance between the repeats.0min-distancenumeric
Min lengthMinimum length of the repeats.5min-lengthnumeric
Parallel threadsNumber of parallel threads used for the task.Autothreads


0 - for using autodetected threads number

Input/Output Ports

The element has 1 input port:

Name in GUI: Input sequence

Name in Workflow File: in-sequence


Slot In GUISlot in Workflow FileType

And 1 output port:

Name in GUI: Repeat annotations

Name in Workflow File: out-annotations


Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table
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