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Increases the size of each feature in files using bedtools slop.

Element type: slopbed


ParameterDescriptionDefault valueParameter in Workflow FileType
Output directorySelect an output directory. Custom - specify the output directory in the 'Custom directory' parameter. Workflow - internal workflow directory. Input file - the directory of the input file.Input fileout-modenumeric
Custom directory

Specify the output directory.

Output file nameA name of an output file. If default of empty value is provided the output name is the name of the first file with additional extention.
GenomeIn order to prevent the extension of intervals beyond chromosome boundaries, bedtools slop requires a genome file defining the length of each chromosome or contig (-g).human.hg18genome-idstring
Each direction increase

Increase the BED/GFF/VCF entry by the same number base pairs in each direction. If this parameter is used -l and -l are ignored. Enter 0 to disable (-b).

Substract from startThe number of base pairs to subtract from the start coordinate. Enter 0 to disable (-l).0l-idnumeric
Add to endThe number of base pairs to add to the end coordinate. Enter 0 to disable (-r).0r-idnumeric


Define -l and -r based on strand. For example. if used, -l 500 for a negative-stranded feature, it will add 500 bp to the end coordinate (-s).Falses-idboolean
As fractionDefine -l and -r as a fraction of the feature’s length. E.g. if used on a 1000bp feature, -l 0.50, will add 500 bp “upstreamâ (-pct).Falsepct-idboolean
Print headerPrint the header from the input file prior to results (-header).Falseheader-idboolean

Input/Output Ports

The element has 1 input port:

Name in GUI: Input File

Name in Workflow File: in-file


Slot In GUISlot in Workflow FileType
Source URLurlstring

And 1 output port:

Name in GUI: Output File

Name in Workflow File: out-file


Slot In GUISlot in Workflow FileType
Source URLurlstring
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