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You can sort sequences in alignment using the Sort submenu in the Actions main menu or from the context menu. Also, you can use the General Options Panel tab:

It is possible to sort sequences in the selected rows region or the whole alignment. There are six ways to sort sequences:

  • By name, ascending

  • By name, descending

  • By length, ascending

  • By length, descending

  • By leading gaps, ascending
  • By leading gaps, descending

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