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The element gets message(s) with assembled reads data and saves the data to the specified file(s) in one of the appropriate formats (SAM, BAM, or UGENEDB).

Element type: write-assembly


ParameterDescriptionDefault valueParameter in Workflow FileType
Data storagePlace to store workflow results: local file system or a database.
Document formatDocument format of the output file.bamdocument-formatstring
Build index (BAM only)Build BAM index for the target BAM file. The file .bai will be created in the same directory.Truebuild-indexboolean
Output fileLocation of output data file. If this attribute is set, slot "Location" in port will not be used.
Output file suffixThis suffix will be used for generating the output file name.
Existing fileIf a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format). If Rename option is chosen existing file will be renamed.Renamewrite-modenumeric

Input/Output Ports

The element has 1 input port:

Name in GUI: Assembly

Name in Workflow File: in-assembly


Slot In GUISlot in Workflow FileType
Assembly dataassemblyassembly
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