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  • Building Profile HMM Using HMMER2
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Task Name: hmm2-build

Builds a profile HMM using the HMMER2 tools.


in — semicolon-separated list of input multiple sequence alignment files. [String, Required]

out — output HMM file. [String, Required]

name — name of the profile HMM. [String, Optional, Default: “hmm_profile”]

calibrate — enables/disables calibration. [Boolean, Optional, Default: true]

seed — random seed, a non-negative integer. [Number, Optional, Default: 0]


ugene hmm2-build --in=CBS.sto --out=CBS.hmm
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