Child pages
  • Building PFM
Skip to end of metadata
Go to start of metadata

Task Name: pfm-build

Builds a position frequency matrix from a multiple sequence alignment file.

Parameters:

in — semicolon-separated list of input MSA files. [String, Required]

out — output file. [String, Required]

type — type of the matrix. [Boolean, Optional, Default: false]

The following values are available:

    • true (dinucleic type)
    • false (mononucleic type)

Dinucleic matrices are more detailed, while mononucleic ones are more useful for small input data sets.

Example:

ugene pfm-build --in=COI.aln --out=result.pfm
  • No labels