Sequence View Extensions

The functionality of the Sequence View can be significantly increased with Sequence View Extensions. Below is the demonstration its functionality.

The Circular Viewer shows the circular view of a sequence:

The 3D Structure Viewer adds 3D visualization for PDB and MMDB files:

The Chromatogram Viewer adds support for chromatograms visualization and editing:

The DNA Graphs Package shows various graphs for sequences:

The Dotplot provides a tool to build dotplots for DNA or RNA sequences.

A number of other instruments add graphical interface for popular sequence analysis methods:

For details see the next sections of the documentation:

• Circular Viewer
  • Circular View Settings
• 3D Structure Viewer
  • Opening 3D Structure Viewer
  • Changing 3D Structure Appearance
    • Selecting Render Style
    • Selecting Coloring Scheme
    • Calculating Molecular Surface
    • Selecting Background Color
    • Selecting Detail Level
    • Enabling Anaglyph View
  • Moving, Zooming and Spinning 3D Structure
  • Selecting Sequence Region
  • Selecting Models to Display
  • Structural Alignment
  • Exporting 3D Structure Image
  • Working with Several 3D Structures Views
• Chromatogram Viewer
  • Exporting Chromatogram Data
  • Viewing Two Chromatograms Simultaneously
• DNA/RNA Graphs Package
  • Description of Graphs
  • Graph Settings
  • Saving Graph Cuttoffs as Annotations
• Dotplot
  • Creating Dotplot
  • Navigating in Dotplot
  • Zooming to Selected Region
  • Selecting Repeat
  • Interpreting Dotplot: Identifying Matches, Mutations, Invertions, etc.
  • Editing Parameters
  • Filtering Results
  • Saving Dotplot as Image
  • Saving and Loading Dotplot
  • Building Dotplot for Currently Opened Sequence
  • Comparing Several Dotplots