Analyzes a nucleotide sequence with a UGENE Query Language (UQL) workflow. The workflow specifies a set of features to search for and their positional relationship.
To learn more about UQL workflows read UGENE Query Designer Manual.
Element type: query
Parameters
| Parameter | Description | Default value | Parameter in Workflow File | Type |
|---|---|---|---|---|
| Workflow (required) | UQL workflow file. | schema | string | |
| Merge | Merges regions of each result into a single annotation. | False | merge | boolean |
| Offset | If the Merge parameter is set to True, adds left and right offsets of the specified length to the annotation. | 0 | offset | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input sequences
Name in Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: Result annotations
Name in Workflow File: out-annotations
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table |
5 Comments
Esita Kayamba
The function of this workflow element should be looked into. when I insert the 'query language' into the workflow and insert the sequence I want to manipulate in the read sequence. I only get no annotations
Svetlana Samoilenko
Esita Kayamba, thank you for your attention to our product. Yes, you found an error, it will be corrected as soon as possible.
Esita Kayamba
Thank you very much. Svetlana Samoilenko
Esita Kayamba
Yuliya Algaer The function of this workflow element should be looked into. when I insert the 'query language' into the workflow ans insert the
Esita Kayamba
"Thanks for correcting the workflow element in v51."