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Extract the coverage and bases count from the incoming assembly.

Element type: extract-assembly-coverage

 Parameters

Output fileLocation of output data file. If this attribute is set, slot "Location" in port will not be used.assembly_coverage.txturl-outstring
ExportData type to export.coverageexport-typestring
TresholdThe minimum coverage value to export.1thresholdnumeric
Parameter
Description
Default value
Parameter in Workflow FileType

Input/Output Ports

The element has 1 input port:

Name in GUI: in-assembly

Name in Workflow File: in-assembly

Slots:


Assembly data

assembly

assembly

Slot In GUI

Slot in Workflow File

Type

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