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  • Search for Transcription Factor Binding Sites (TFBS) in Genomic Sequences
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This workflow predicts binding sites for number of transcription factors of interest using SITECON algorithm. The present workflow sample is designed for simultaneous recognition of binding sites for 3 different transcription factor types, you can expand it for recognition of any desired number of transription factor types.SITECON - is a program pakage for recognition of potential transcription factor binding sites basing on the data about conservative conformational and physicochemical properties revealed on the basis of the binding sites sets analysis.Citing SITECON Please cite:Oshchepkov D.Y., Vityaev E.E., Grigorovich D.A., Ignatieva E.V., Khlebodarova T.M.SITECON:a tool for detecting conservative conformational and physicochemicalproperties in transcription factor binding site alignments and for siterecognition. // Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W208-12.

How to Use This Sample

If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation.

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