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  • Write Alignment Element
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Writes all supplied alignments to file(s) in selected format.

Parameters in GUI

ParameterDescriptionDefault value
Data storagePlace to store workflow results: local file system or a database. 
Document formatFormat of the output file.clustal
Output file Location of the output data file. If this parameter is set, then the “Location” slot is not taken into account. 
Output file suffixThis suffix will be used for generating the output file name. 
Existing fileIf a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format).Rename

Parameters in Workflow File

Type: write-msa

ParameterParameter in the GUIType
data-storageData storagestring
document-formatDocument format


Available values are:

  • clustal
  • mega
  • msf
  • sam
  • srfasta
  • stockholm
url-outOutput filestring
url-suffixOutput file suffixstring
write-modeExisting file


Available values are:

  • 0 - for overwrite
  • 1 - for append
  • 2 - for rename

Input/Output Ports

The element has 1 input port:

Name in GUI: Multiple sequence alignment

Name in Workflow File: in-msa


Slot In GUISlot in Workflow FileType
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