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  • Write Annotations Element
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Writes all supplied annotations to file(s) in the selected format.

Parameters in GUI

ParameterDescriptionDefault value
Data storagePlace to store workflow results: local file system or a database. 
Output fileLocation of the output data file. If this attribute is set, slot “Location” in port will not be used. 
Output file suffixThis suffix will be used for generating the output file name. 
Existing fileIf a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format).Rename
Document formatDocument format of output file.genbank
Annotations nameObject name of the annotations.unknown feature
CSV separatorString which separates values in CSV file(s).”,” (comma)
Write sequence nameWrite sequence to CSV file(s).False

Parameters in Workflow File

Type: write-annotations

ParameterParameter in the GUIType
data-storageData storagestring
url-outOutput filestring
url-suffixOutput file suffixstring
write-modeExisting file


Available values are:

  • 0 - for overwrite
  • 1 - for append
  • 2 - for rename
document-formatDocument format


Available values are:

  • CSV
  • GenBank
  • GFF
annotations-nameAnnotations namestring
separatorCSV separatorstring
write_namesWrite sequence nameboolean

Input/Output Ports

The element has 1 input port:

Name in GUI: Input annotations

Name in Workflow File: in-annotations


Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table-list
Source URLurlstring
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