Write Sequence Element

Writes all supplied sequences to file(s) in selected format.

Parameters in GUI

Parameter	Description	Default value
Data storage	Place to store workflow results: local file system or a database.
Output file	Location of the output data file. If this attribute is set, then the “Location” slot is not taken into account.
Output file suffix	This suffix will be used for generating the output file name.
Existing file	If a target file already exists, you can specify how it should be handled: either overwritten, renamed or appended (if supported by file format).	Rename
Document format	Format of the output file.	fasta
Accumulate objects	Accumulates all incoming data in one file or creates separate files for each input. In the latter case, an incremental numerical suffix is added to a file name.	True
Split sequence	Split each incoming sequence on several parts.	1

Parameters in Workflow File

Type: write-sequence

Parameter	Parameter in the GUI	Type
data-storage	Data storage	string
url-out	Output file	string
url-suffix	Output file suffix	string
write-mode	Existing file	numeric Available values are: 0 - for overwrite 1 - for append 2 - for rename
document-format	Document format	string Available values are: fasta fastq genbank raw
accumulate	Accumulate objects	boolean
split	Split sequence	numeric

Input/Output Ports

The element has 1 input port:

Name in GUI: Sequence

Name in Workflow File: in-sequence

Slots: