Apply VCF variants to a fasta file to create consensus sequence.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Output FASTA consensus | The url to the output file with the result consensus. |
Parameters in Workflow File
Type: vcf-consensus
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| consensus-url | Output FASTA consensus | string |
Input/Output Ports
The element has 1 input ports:
Name in GUI: Input FASTA and VCF
Name in Workflow File: in-data
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Fasta url | fasta | string |
| VCF url | vcf | string |
And 1 output port:
Name in GUI: Fasta consensus url
Name in Workflow File: out-consensus
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| out-consensus | out-consensus | string |