Parses information, added to variations by SnpEff, into standard annotations.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Output file | Location of output data file. If this attribute is set, slot "Location" in port will not be used. | |
| Document format | Document format of output file. | genbank |
Parameters in Workflow File
Type: convert-snpeff-variations-to-annotations
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| url-out | Output file | string |
| document-format | Document format | string |
Input/Output Ports
The element has 1 input ports:
Name in GUI: Input file URL
Name in Workflow File: in-variations-url
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Source URL | url | string |