Reads sequences and annotations if any from local or remote files.
All sequence file formats supported by UGENE (e.g. GenBank, FASTA) are allowed as input to this element.
See the list of all available formats here.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Input files | Semicolon-separated list of datasets to the input files. | |
| Mode | If the file contains more than one sequence, “split” mode sends them as is to output, while “merge” appends all the sequences and outputs the merged sequence. | Split |
| Merging gap | In the “merge” mode, inserts the specified number of gaps between the original sequences. This is helpful e.g. to avoid finding false positives at the merge boundaries. | 10 |
| Sequence count limit | Split mode only. Read only first N sequences from each file. Set 0 value for reading all sequences. | 0 |
| Accession filter | Only reports a sequence with the specified accession (id). |
Parameters in Workflow File
Type: read-sequence
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| url-in | Input files | string |
| mode | Mode | numeric Available values are:
|
| merge-gap | Merging gap | numeric |
| sequence-count-limit | Sequence count limit | numeric |
| accept-accession | Accession filter | string |
Input/Output Ports
The element has 1 output port:
Name in GUI: Sequence
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
| Set of annotations | annotations | annotation-table |
| Source URL | url | string |