Child pages
  • Fetch Sequences by ID From Annotation Element
Skip to end of metadata
Go to start of metadata

Parses annotations to find any IDs and fetches corresponding sequences.

Parameters in GUI

ParameterDescriptionDefault value
Save file to directoryThe directory to store sequence files loaded from a database.default
NCBI databaseThe database to read from.

nucleotide

Available values are:

  • nucleotide
  • protein

Parameters in Workflow File

Type: fetch-sequence

ParameterParameter in the GUIType
save-dirSave file to directorystring
databaseNCBI databasestring

The element has 1 input port:

Name in GUI: Input annotations

Name in Workflow File: in-annotations

Slots:

Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table

And 1 output port:

Name in GUI: Sequence

Name in Workflow File: out-sequence

Slots:

Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table
Sequencesequencesequence
  • No labels