Builds a frequency matrix. Frequency matrices are used for probabilistic recognition of transcription factor binding sites.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Matrix type | Dinucleic matrices are more detailed, while mononucleic one are more useful for small input data sets. | Mononucleic |
Parameters in Workflowa File
Type: fmatrix-build
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| type | Matrix type | boolean Available values are:
|
Input/Output Ports
The element has 1 input port:
Name in GUI: Input alignment
Name in Workflow File: in-msa
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| MSA | msa | msa |
And 1 output port:
Name in GUI: Frequency matrix
Name in Workflow File: out-fmatrix
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Frequency matrix | fmatrix | fmatrix |