Child pages
  • Map to Reference Element
Skip to end of metadata
Go to start of metadata

Align input sequences (e.g. Sanger reads) to the reference sequence.

Parameters in GUI

ParameterDescriptionDefault value
Reference URLA URL to the file with a reference sequence. 

Parameters in Workflow File

Type: align-to-reference

ParameterParameter in the GUIType
referenceReference URL

string

Input/Output Ports

The element has 1 input port:

Name in GUI: Input sequence

Name in Workflow File: in-sequence

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequence

sequence

And 1 output port:

Name in GUI: Aligned data

Name in Workflow File: out

Slots:

Slot In GUISlot in Workflow FileType
Set of annotationsannotationsann_table
MSAmsamalignment
Sequencesequencesequence
  • No labels