The Dotplot plugin provides a tool to build dot plots dotplots for DNA or RNA sequences. This allows comparing these sequences graphically. Using a dot plotdotplot, you can easily identify such differences between sequences as mutations, inversions, insertions, deletions and low-complexity regions.
Also the plugin provides advanced features: comparing multiple dot plotsdotplots, navigation in a dot plotdotplot, dot plots dotplots synchronization, saving and loading a dot plotdotplot, etc.
An example of a dot plot dotplot view:
<center> <br> <img src="/wiki/download/attachments/4227416/Dotplot.png"/> <br> </center>
The Dotplot plugin uses the Repeat Finder plugin to build a dot plotdotplot, make sure you have the Repeat Finder plugin installed.