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The Dotplot plugin provides a tool to build dot plots for DNA or RNA sequences. This allows comparing these sequences graphically. Using a dot plot, you can easily identify such differences between sequences as mutations, inversions, insertions, deletions and low-complexity regions.

Also the plugin provides advanced features: comparing multiple dot plots, navigation in a dot plot, dot plots synchronization, saving and loading a dot plot, etc.

An example of a dot plot view:

The Dotplot plugin uses the Repeat Finder plugin to build a dot plot, make sure you have the Repeat Finder plugin installed.

The Dotplot features are described in more details below.

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