...
- JalView (Default) — it is based on the JalView algorithm. Returns ‘+’ if there are 2 characters with high frequency. Returns symbol in lower case if the symbol content in a row is lower than the specified threshold.
- ClustalW — emulates the ClustalW program and file format behavior.
- Levitsky — this algorithm is proposed by Victor Levitsky to calculate consensus of DNA alignments. At first, it collects global alignment frequencies for every symbol using extended (15 symbols) DNA alphabet. Then, for every column it selects the rarest symbol in the whole alignment with percentage in the column greater or equals to the threshold value.
- Strict — the algorithm returns gap character (‘—’) if symbol frequency in a column is lower than the threshold specified.
Also you can select copy to clipboard parameter. The following chapter describe more details about copying sequences.
Also the General tab shows the general information about an alignment and allows to select a reference sequence. The following chapter describes how to export a consensus sequence:
| Children Display | ||
|---|---|---|
|
Also you can select copy to clipboard parameter. The following chapter describe more details about copying sequences: