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BLAST+ is a newer version of the BLAST package and is recommended to use by the NCBI.
| Warning |
|---|
BLAST+ is used as an external tool from UGENE and it must be installed on your system. To learn more about the external tools, please, read main UGENE User Manual. |
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Database name (required) | Base name for BLAST DB files. | |
| Database path (required) | Path to the database files. | |
| Tool path (required) | Path to a BLAST+ executable. | default |
| Search type (required) | Selects the type of BLAST searches. | blastn |
| Annotate as | Name of the result annotations. | misc_feature |
| Expected value | Expectation threshold value. | 10 |
| Temporary directory (required) | Directory for temporary files. | default |
Parameters in Workflow File
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The element has 1 input port:
Name in GUI: Input sequence
Name in Workflow File: in-sequence
Slots:
| Slot In GUI | Slot in Schema Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: Annotations
Name in Workflow File: out-annotations
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Set of annotations | annotations | annotation-table |