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If you haven't used the workflow samples in UGENE before, look at the "How to Use Sample Workflows" section of the documentation. |
Workflow Sample Location
The workflow sample "Raw ChIP-Seq processing" can be found in the "NGS" section of the Workflow Designer samples.
Workflow Image
There are two versions of the workflow available. The workflow for single-end reads looks as follows:
HTML |
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<center> <br> <img src="/wiki/download/attachments/13008927/raw_chipseq_single-end14058844/Raw ChIP-Seq Processing.png"/> <br> </center> |
The workflow for paired-end short appearance is the following:
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<center>
<br>
<img src="/wiki/download/attachments/14058844/Raw ChIP-Seq Processing_1.png"/>
<br>
</center> |
Workflow Wizard
The wizard for single-end reads has 5 page.
Input data: On this page you must input FASTQ file(s).
HTML <center> <br> <img src="/wiki/download/attachments/14058844/Raw ChIP-Seq Processing_2.png"/> <br> </center>
Pre-processing: On this page you can modify filtration parameters.
HTML <center> <br> <img src="/wiki/download/attachments/14058844/Raw ChIP-Seq Processing_3.png"/> <br> </center>
Mapping: On this page you must input reference and optionally modify advanced parameters.
HTML <center> <br> <img src="/wiki/download/attachments/14058844/Raw ChIP-Seq Processing_4.png"/> <br> </center>
Post-processing: On this page you can modify post-processing parameters.
HTML <center> <br> <img src="/wiki/download/attachments/
...
14058844/Raw ChIP-Seq Processing_5.png"/> <br> </center>
Output data: On this page you must input output parameters.
HTML <center> <br> <img src="/wiki/download/attachments/14058844/Raw ChIP-Seq Processing_6.png"/> <br> </center>
The wizard for paired-end reads has 5 page.
Input data: On this page you must input FASTQ file(s).
HTML <center> <br> <img src="/wiki/download/attachments/14058844/Raw ChIP-Seq Processing_7.png"/> <br> </center>
Pre-processing: On this page you can modify filtration parameters.
HTML <center> <br> <img src="/wiki/download/attachments/14058844/Raw ChIP-Seq Processing_8.png"/> <br> </center>
Mapping: On this page you must input reference and optionally modify advanced parameters.
HTML <center> <br> <img src="/wiki/download/attachments/14058844/Raw ChIP-Seq Processing_9.png"/> <br> </center>
Post-processing: On this page you can modify post-processing parameters.
HTML <center> <br> <img src="/wiki/download/attachments/14058844/Raw ChIP-Seq Processing_10.png"/> <br> </center>
Output data: On this page you must input output parameters.
HTML <center> <br> <img src="/wiki/download/attachments/14058844/Raw ChIP-Seq Processing_11.png"/> <br> </center>