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NGS

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Created by Yuliya Algaer, last modified on Oct 22, 2013

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Assembly with Spades
Call Variants with SAMtools
ChIP-Seq Coverage
ChIP-seq Analysis with Cistrome Tools
Extract Consensus from Assembly
Extract Coverage from Assembly
Extract Transcript Sequences
Quality Control by FastQC
Raw ChIP-Seq Processing
Raw DNA-Seq Processing
Raw RNA-Seq Processing
RNA-seq Analysis with Tuxedo Tools
Variation Annotation with SnpEff

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