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| Menu | Description |
|---|---|
| File | A set of project/file level operations. Example: create, open, etc. a project; open a document; access remote database to download a file. |
| Actions | Various actions associated with the active window. Example: export, remove, edit, analyze a sequence using different plugins (for the Sequence View); edit, align, change the consensus mode (for the Alignment Editor). |
| Settings | Application, plugins and tools settings. |
| Tools | Various tools, independent of an active window. This menu is extended by different plugins. Example: HMMER2 / HMMER3 tools, SITECON, Workflow Designer. |
| Window | A list of active windows and basic manipulations with the windows. Example: close all windows, tile windows, select next window. |
| Help | Application help and check for updates. |
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You can use UGENE sample files. There are the following sample data: ABIF, ACE, Assembly, CLUSTALW, EMBL, FASTA, FASTQ, Genbank, GFF, HMM, MMDB, MSF, Newick, PDB, Raw, SCF, Stockholm, Swiss-Prot. These data files are located in the main UGENE directory: ugene/data/samples.
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