In UGENE you can create a data processing workflows with a help of the Workflow Designer. To use the Workflow Designer go to the Tools-->Workflow Designer:
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The following window appears:
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Example 4: You can find ORFs in a sequence and save it as annotations using the following workflow:
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Create the workflow, choose parameters and click the Run button.
Note that workflows in UGENE are easy to read and share, can be reused multiple times and compiled into a separate standalone command line tools!