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Example 4: You can find pattern in a sequence or in sequences and save it as annotations using the following workflow:
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Create the workflow, choose parameters and click the Run button. The output file is your sequence with the pattern as annotation. If you want to search pattern in many sequences you can add these sequences into Read Sequence element.
Note that workflows in UGENE are easy to read and share, can be reused multiple times and compiled into a separate standalone command line tools!
For more detailed information about Workflow Designer use the Workflow Designer Documentation.