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Two Also you can use Tree Settings tab of the Options Panel:

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Three methods for building phylogenetic trees are supported:

  1. The PHYLIP Neighbour-Joining method. The PHYLIP package implementation of the method is used under the hood.
  2. The MrBayes external tool. Check MrBayes Web Site for more details.
  3. PhyML Maximum Likelihood method. Check PhyML Maximum Likelihood Web Site for more details.

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