This section contains detailed description of all workflow elements presented in the Workflow Designer.
For each element you can find:
Description of the parameters used in the GUI
Corresponding parameters names used in a schema file
Information about input and output ports
The type of a parameter can be one of the following:
string
A string.
numeric
A number.
boolean
A boolean data type. Available values are: true / false, 0 / 1 and yes / no.
A port’s slot type can be one of the following:
sequence
Biological sequence
msa
Multiple sequence alignment
text
A text
annotation-table
Table of annotations
annotation-table-list
A list of different tables of annotations
ebwt-index
Bowtie index
hmm2-profile
A HMM profile of HMMER2 package
fmatrix
Frequency matrix
wmatrix
Weight matrix
sitecon-model
SITECON model