WEVOTE (WEighted VOting Taxonomic idEntification) is a metagenome shortgun sequencing DNA reads classifier based on an ensemble of other classification methods (Kraken, CLARK, etc.).
Parameters in GUI
| Parameter | Description | Defaultvalue |
|---|---|---|
| Penalty | Score penalty for disagreements (-k) | 2 |
| Number of agreed tools | Specify the minimum number of tools agreed onWEVOTEdecision (-a). | 0
|
| Score threshold | Score threshold (-s) | 0 |
| Number of threads | Use multiple threads (-n). | 8 |
| Output file | Specify the output text file name. | auto |
Parameters in Workflow File
Type: wevote-classify
Parameter | Parameter in the GUI | Type |
|---|---|---|
penalty | Penalty | number |
number-of-agreed-tools | Number of agreed tools | number |
score-threshold | Score threshold | number |
threads | Number of threads | number |
output-url | Output file | string |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input classification CSV file:
Input a CSV file in the following format: 1) a sequence name 2) taxID from the first tool 3) taxID from the second tool 4) etc.
Name in Workflow File: in
Slots:
| SlotInGUI | Slot in Workflow File | Type |
|---|---|---|
| Input URL | url | string |
The element has 1 output port:
Name in GUI: WEVOTE Classification:
A map of sequence names with the associated taxonomy IDs.
Name in Workflow File: out
Slots:
| SlotInGUI | Slot in Workflow File | Type |
|---|---|---|
Taxonomy classification data | tax-data | tax-classification |