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  • CASAVA FASTQ Filter Script Element
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Filters FASTQ reads generated by CASAVA 1.8.

The element works on the basis of the following script:

var seqName = getName(in_sequence);
if(seqName.search(".* [^:]*:N:[^:]*:") == 0){
out_sequence = in_sequence;
}else{
out_sequence = null;
}

Parameters in GUI

The element has no parameters.
Parameters in Workflow File

Type: “Script-CASAVA-FASTQ-filter”

 The element has no parameters.

Input/Output Ports

The element has 1 input port:

Name in GUI: input data

Name in Workflow File: in

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence

And 1 output port:

Name in GUI: output data

Name in Workflow File: out

Slots:

Slot In GUISlot in Workflow FileType
Sequencesequencesequence
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