Filters sequences by their qualities.
The element works on the basis of the following script:
var qual;
if(hasQuality(in_sequence)) {
qual = getMinimumQuality(in_sequence);
if(qual >= quality) {
out_sequence = in_sequence;
}
}
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| quality | Quality used to filter. |
Parameters in Workflow File
Type: “Script-Quality filter example”
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| quality | quality | numeric |
Input/Output Ports
The element has 1 input port:
Name in GUI: Input data
Name in Workflow File: in
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |
And 1 output port:
Name in GUI: Output data
Name in Workflow File: out
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | sequence |