Child pages
  • Building HMM Model
Skip to end of metadata
Go to start of metadata

You are viewing an old version of this page. View the current version.

Compare with Current View Page History

« Previous Version 2 Current »

The HMM3 build tool is used to build a new HMM profile from a multiple alignment. You can use any alignment file formats supported by UGENE.

The output HMM profile format is compatible with the HMMER3 package, but it is not compatible with the HMMER2.

The HMM3 build automatically calibrates the target model.



The HMM3 configuration dialog provides an easy way to set appropriate search parameters.

Here you can see effective weighting strategies options:



  • No labels