Extract the consensus sequence from the incoming multiple sequence alignment.
Parameters in GUI
| Parameter | Description | Default value |
|---|---|---|
| Algorithm | The algorithm of consensus extracting. | |
| Threshold | The threshold of the algorithm. | 100 |
| Keep gaps | Set this parameter if the result consensus must keep the gaps. | True |
Parameters in Workflow File
Type: extract-msa-consensus-sequence
| Parameter | Parameter in the GUI | Type |
|---|---|---|
| algorithm | Algorithm | string |
| threshold | Threshold | numeric |
| keep-gaps | Keep gaps | boolean |
Input/Output Ports
The element has 1 input port:
Name in GUI: in-msa
Name in Workflow File: in-msa
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| MSA | msa | msa |
And 1 output port:
Name in GUI: out-sequence
Name in Workflow File: out-sequence
Slots:
| Slot In GUI | Slot in Workflow File | Type |
|---|---|---|
| Sequence | sequence | seq |