--help | -h [<option_name> | <task_name>]
Shows help information. For example:
ugene --help ## Shows general UGENE CLI help. ugene -h ugene --help=<option_name> ## Shows help for the <option_name> option. ugene -h <option_name> ugene --help=<task_name> ## Shows help for the <task_name> task. ugene -h <task_name>
--task=<task_name> [<task_parameter>=value ...]
Specifies the task to run. A user-defined UGENE workflow schema can be used as a task name. For example:
ugene --task=align --in=COI.aln -out result.aln ugene --task=C:\myschema.uwl --in=COI.aln --out=res.aln
--log-no-task-progress
A task progress is shown by default when a task is running. This option specifies not to show the progress.
--log-level="[<category1>=]<level1> [, ...]"
Sets the log level per category. If a category is not specified, the log level is applied to all categories.
The following categories are available:
- “Algorithms”
- “Console”
- “Core Services”
- “Input/Output”
- “Performance”
- “Remote Service”
- “Scripts”
- “Tasks”.
The following log levels are available: TRACE, DETAILS, INFO, ERROR or NONE.
By default, loglevel=ERROR.
For example:
ugene --log-level=NONE ugene --log-level="Tasks=DETAILS, Console=DETAILS"
--log-format="<format_string>"
Specifies the format of a log line.
Use the following notations: L - level, C - category, YYYY or YY - year, MM - month, dd - day, hh - hour, mm - minutes, ss - seconds, zzz - milliseconds.
By default, logformat=”[L][hh:mm]”.
--license
Shows license information.
--lang=language_code
Specifies the language to use (e.g. for the log output). The following values are available:
- CS (Czech)
- EN (English)
- RU (Russian)
--log-color-output
If log output is enabled, this option make it colored: ERROR messages are displayed in red, DETAILS messages are displayed in green, TRACE messages are displayed in blue.