--help | -h [<option_name> | <task_name>]
Shows help information. For example:
ugene --help ## Shows general UGENE CLI help. ugene -h ugene --help=<option_name> ## Shows help for the <option_name> option. ugene -h <option_name> ugene --help=<task_name> ## Shows help for the <task_name> task. ugene -h <task_name>
--task=<task_name> [<task_parameter>=value ...]
Specifies the task to run. A user-defined UGENE workflow schema can be used as a task name. For example:
ugene --task=align --in=COI.aln -out result.aln ugene --task=C:\myschema.uwl --in=COI.aln --out=res.aln
--log-no-task-progress
A task progress is shown by default when a task is running. This option specifies not to show the progress.
--log-level="[<category1>=]<level1> [, ...]"
Sets the log level per category. If a category is not specified, the log level is applied to all categories.
The following categories are available:
- “Algorithms”
- “Console”
- “Core Services”
- “Input/Output”
- “Performance”
- “Remote Service”
- “Scripts”
- “Tasks”.
The following log levels are available: TRACE, DETAILS, INFO, ERROR or NONE.
By default, loglevel=ERROR.
For example:
ugene --log-level=NONE ugene --log-level="Tasks=DETAILS, Console=DETAILS"
--log-format="<format_string>"
Specifies the format of a log line.
Use the following notations: L - level, C - category, YYYY or YY - year, MM - month, dd - day, hh - hour, mm - minutes, ss - seconds, zzz - milliseconds.
By default, logformat=”[L][hh:mm]”.
--license
Shows license information.
--lang=language_code
Specifies the language to use (e.g. for the log output). The following values are available:
- CS (Czech)
- EN (English)
- RU (Russian)
--log-color-output
If log output is enabled, this option make it colored: ERROR messages are displayed in red, DETAILS messages are displayed in green, TRACE messages are displayed in blue.
--session-db
Session database is stored in the temporary file that is created for every UGENE run. But it can supplied with the command line argument. If the supplied file does not exest it will be created. The session database file is removed after closing of UGENE.
For example:
ugene --session-db=D:/session.ugenedb