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The element gets the message(s) with annotations data and saves the data to the specified file(s) in one of the appropriate formats (GenBank, GTF, etc.).

Element type: write-annotations

Parameters


ParameterDescriptionDefault valueParameter in Workflow FileType
Data storagePlace to store workflow results: local file system or a database.
data-storagestring
Output fileLocation of the output data file. If this attribute is set, slot “Location” in port will not be used.
url-outstring
Output file suffixThis suffix will be used for generating the output file name.
url-suffixstring
Existing fileIf a target file already exists, you can specify how it should be handled: either overwritten, renamed, or appended (if supported by file format).Renamewrite-mode

numeric

Available values are:

  • 0 - for overwrite
  • 1 - for append
  • 2 - for rename
Document formatDocument format of the output file.genbankdocument-format

string

Available values are:

  • CSV
  • GenBank
  • GFF
Merge annotations table

If true all annotation tables from the dataset will be merged into one. The value of the Annotation table name parameter will be used as the name of the result annotation table.

Falsemergeboolean


Input/Output Ports

The element has 1 input port:

Name in GUI: Input annotations

Name in Workflow File: in-annotations

Slots:

Slot In GUISlot in Workflow FileType
Set of annotationsannotationsannotation-table-list
Sequencesequencesequence
Source URLurlstring
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