Page tree
Skip to end of metadata
Go to start of metadata

You are viewing an old version of this page. View the current version.

Compare with Current View Page History

Version 1 Next »

To apply an alignment highlighting mode, select it in the Highlighting context menu:



or on the Highlighting tab of the Options Panel:



 The following modes are available:

  • Agreements — highlights symbols that coincide with the reference sequence. 

  • Disagreements — highlights nucleotides that differ from the reference sequence.

  • Gaps - highlights gaps.
  • Conservation level - highlights conservation level of symbols in a multiple alignment >= or <= treshhold. To select the conservation parameters use the Highlighting Options Panel tab.
  • Transitions - highlights transitions.
  • Transversions - highlights transversions.

To use dots instead of symbols which are not highlighted check the Use dots checkbox in the Options Panel or use the Highlighting->Use dots context menu item.

To select a reference sequence use the Set this sequence as reference context menu or Reference sequence field in the Highlighting tab of the Options Panel.

Also you can export highlighting with a help of the Export button in the Options Panel or by the Export->Export highlighted context menu item. The following dialog will appear:



Select file to export, exported area and click on the Export button. The task report will appear in the Notifications.

  • No labels