The element searches for repeats in the input sequence.
Parameters in GUI
Parameter | Description | Default value |
---|---|---|
Annotate As | Name of the result annotations. | repeat_unit |
Algorithm | Algorithm used to search for repeats. Available values are:
| Suffix index |
Filter nested | If True, filters nested repeats. | True |
Identity | Repeats percentage identity. | 100% |
Inverted | If True, searches for inverted repeats. | False |
Min length | Minimum length of repeats. | 5bp |
Max length | Maximum length of repeats. | 10000bp |
Parallel threads | Number of parallel threads used to execute the calculations. | Auto |
Parameters in Schema File
Type: repeats
Parameter | Parameter in the GUI | Type |
---|---|---|
key | Annotate As | string |
algorithm | Algorithm | string Available values are:
|
filter-nested | Filter nested | boolean |
identity | Identity | numeric |
invert | Invert | boolean |
min-length | Min length | numeric |
max-length | Max length | numeric |
threads | Parallel threads | numeric |