Page tree
Skip to end of metadata
Go to start of metadata

The element searches the input sequence for transcription factor binding sites (TFBSs) significantly similar to the specified SITECON profiles.

Parameters in GUI

ParameterDescriptionDefault value
Annotate AsName of the result annotations.misc_feature
DirectionSee the description here.Any
Min Err1Filters the results by minumum value of Error type I.0
Max Err2Filters the results by maximum value of Error type II.0.001
ModelSemicolon-separated list of SITECON profiles.You must specify a value!
Min scoreRecognition quality percentage threshold. Choosing too low threshold will lead you to recognition of too many TFBS. Choosing too high threshold will lead to no TFBS recognized.85%


Parameters in Schema File

Type: sitecon

ParameterParameter in the GUIType
keyAnnotate Asstring
err1Min Err1numeric
err2Max Err2numeric
scoreMin scorenumeric


Available values are:

  • complement
  • direct
  • both



  • No labels