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<center> <br> <img src="/wiki/download/attachments/13008932/raw_rnaseq_single-end_with_tophat14058846/Raw RNA-Seq Processing.png"/> <br> </center> |
The workflow with mapping for paired-end short appearance is the following:
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<center>
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<img src="/wiki/download/attachments/14058846/Raw RNA-Seq Processing_1.png"/>
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Workflow Wizard
The wizard for single-end reads has 5 page.
Input data: On this page you must input FASTQ file(s).
HTML <center> <br> <img src="/wiki/download/attachments/14058846/Raw RNA-Seq Processing_2.png"/> <br> </center>
Pre-processing: On this page you can modify filtration parameters.
HTML <center> <br> <img src="/wiki/download/attachments/14058846/Raw RNA-Seq Processing_3.png"/> <br> </center>
Mapping: On this page you must input reference and optionally modify advanced parameters.
HTML <center> <br> <img src="/wiki/download/attachments/
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14058846/Raw RNA-Seq Processing_4.png"/> <br> </center>
Output data: On this page you must input output parameters.
HTML <center> <br> <img src="/wiki/download/attachments/14058846/Raw RNA-Seq Processing_5.png"/> <br> </center>
The wizard for paired-end reads has 5 page.
Input data: On this page you must input FASTQ file(s).
HTML <center> <br> <img src="/wiki/download/attachments/14058846/Raw RNA-Seq Processing_6.png"/> <br> </center>
Pre-processing: On this page you can modify filtration parameters.
HTML <center> <br> <img src="/wiki/download/attachments/14058846/Raw RNA-Seq Processing_7.png"/> <br> </center>
Mapping: On this page you must input reference and optionally modify advanced parameters.
HTML <center> <br> <img src="/wiki/download/attachments/14058846/Raw RNA-Seq Processing_8.png"/> <br> </center>
Output data: On this page you must input output parameters.
HTML <center> <br> <img src="/wiki/download/attachments/14058846/Raw RNA-Seq Processing_9.png"/> <br> </center>