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<center> <img src="/wiki/download/attachments/2523429/ugene_main_window.gif"/> </center> |
Using these menus you can run many algorithms, configure different settings and get help:
| Menu | Description |
|---|---|
| File | A set of project level operations. Example: create, open, etc. a project; open a document; access remote database to download a file. |
| Actions | Various actions associated with the active window. Example: export, remove, edit, analyze a sequence using different plugins (for the Sequence View); edit, align, change the consensus mode (for the Alignment Editor). |
| Settings | Application, plugins and tools settings. |
| Tools | Various tools, independent of an active window. This menu is extended by different plugins. Example: HMMER2 / HMMER3 tools, SITECON, Workflow Designer. |
| Window | A list of active windows and basic manipulations with the windows. Example: close all windows, tile windows, select next window. |
| Help | Application help and check for updates. |
The menus can be dynamically populated with new actions added by plugins.
- Creating, editing and annotating of nucleotide and protein sequences
- Creating, editing, aligning of multiple sequence alignments
- Assembling, browsing and analyzing of short reads assemblies
- 3D structure viewer
- Building and visualizing of phylogenetic trees
- Running dozens of algorithms for analyzing
- Importing and exporting data into different bio-formats
- Combining algorithms into custom workflows with UGENE Workflow Designer
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